Dask Local Cluster¶
worker_resources = ComputeResources( number_of_threads=1, number_of_gpus=1, preferred_gpu_toolkit=GPUToolkit.CUDA, ) with DaskLocalCluster(number_of_workers=1, resources_per_worker=worker_resources) as local_backend: local_backend.submit_task(logging.info, "Hello World") ...
Its main purpose is for use when debugging calculations locally, or when running calculations on machines with large numbers of CPUs or GPUs.
Dask HPC Cluster¶
DaskPBSBackend backends wrap around the dask LSFCluster and PBSCluster classes respectively, and both inherit
BaseDaskJobQueueBackend class which implements the core of their functionality. They predominantly run in an
adaptive mode, whereby the backend will automatically scale up or down the number of workers based on the current number
of tasks that the backend is trying to execute.
These backends integrate with the queueing systems which most HPC cluster use to manage task execution. They work by submitting jobs into the queueing system which themselves spawn dask workers, which in turn then execute tasks on the available compute nodes:
# Create the object which describes the compute resources each worker should request from # the queueing system. worker_resources = QueueWorkerResources( number_of_threads=1, number_of_gpus=1, preferred_gpu_toolkit=QueueWorkerResources.GPUToolkit.CUDA, per_thread_memory_limit=worker_memory, wallclock_time_limit="05:59", ) # Create the backend object. setup_script_commands = [ f"conda activate openff-evaluator", f"module load cuda/10.1", ] calculation_backend = DaskLSFBackend( minimum_number_of_workers=1, maximum_number_of_workers=max_number_of_workers, resources_per_worker=queue_resources, queue_name="gpuqueue", setup_script_commands=setup_script_commands, ) # Perform some tasks. with calculation_backend: calculation_backend.submit_task(logging.info, "Hello World") ...
setup_script_commands argument takes a list of commands which should be run by the queue job submission
script before spawning the actual worker. This enables setting up custom environments, and setting any required
To ensure optimal behaviour we recommend changing / uncommenting the following settings in the dask distributed
configuration file (this can be found at
distributed: worker: daemon: False comm: timeouts: connect: 10s tcp: 30s deploy: lost-worker-timeout: 15s
See the dask documentation for more information about changing